Sequence Chip Atlas

npx shadcn@latest add button card input textarea select dialog sheet tabs badge separator checkbox switch slider tooltip dropdown-menu table

:root {
  --background: #F8FAF8;
  --foreground: #122033;
  --card: #FFFFFF;
  --card-foreground: #122033;
  --popover: #FFFFFF;
  --popover-foreground: #122033;
  --primary: #2445D8;
  --primary-foreground: #ffffff;
  --secondary: #0F8DB3;
  --secondary-foreground: #ffffff;
  --muted: #607082;
  --muted-foreground: #122033;
  --accent: #10A66E;
  --accent-foreground: #ffffff;
  --destructive: #C84A5A;
  --border: #D7E1EA;
  --input: #D7E1EA;
  --ring: #10A66E;
  --chart-1: #2445D8;
  --chart-2: #0F8DB3;
  --chart-3: #10A66E;
  --chart-4: #10A66E;
  --chart-5: #B7791F;
  --sidebar: #FFFFFF;
  --sidebar-foreground: #122033;
  --sidebar-primary: #2445D8;
  --sidebar-primary-foreground: #ffffff;
  --sidebar-accent: #2F80ED;
  --sidebar-accent-foreground: #ffffff;
  --sidebar-border: #D7E1EA;
  --sidebar-ring: #10A66E;
  --radius: 18px;
}

.dark {
  --background: #0f1115;
  --foreground: #f8fafc;
  --card: #181b22;
  --card-foreground: #f8fafc;
  --popover: #181b22;
  --popover-foreground: #f8fafc;
  --primary: #2445D8;
  --primary-foreground: #ffffff;
  --secondary: #252a33;
  --secondary-foreground: #f8fafc;
  --muted: #252a33;
  --muted-foreground: #a1a1aa;
  --accent: #10A66E;
  --accent-foreground: #ffffff;
  --destructive: #C84A5A;
  --border: #303642;
  --input: #303642;
  --ring: #10A66E;
  --chart-1: #2445D8;
  --chart-2: #0F8DB3;
  --chart-3: #10A66E;
  --chart-4: #10A66E;
  --chart-5: #B7791F;
  --sidebar: #181b22;
  --sidebar-foreground: #f8fafc;
  --sidebar-primary: #2445D8;
  --sidebar-primary-foreground: #ffffff;
  --sidebar-accent: #10A66E;
  --sidebar-accent-foreground: #ffffff;
  --sidebar-border: #303642;
  --sidebar-ring: #10A66E;
  --radius: 18px;
}

import { Badge } from "@/components/ui/badge";
import { Button } from "@/components/ui/button";
import {
  Card,
  CardContent,
  CardDescription,
  CardFooter,
  CardHeader,
  CardTitle,
} from "@/components/ui/card";
import { Input } from "@/components/ui/input";
import { Tabs, TabsList, TabsTrigger } from "@/components/ui/tabs";

export function SequenceChipAtlasShadcnKit() {
  return (
    <section className="grid gap-4 rounded-[var(--radius)] border bg-background p-4 text-foreground">
      <div className="flex items-start justify-between gap-4">
        <div>
          <Badge variant="outline">shadcn/ui</Badge>
          <h2 className="mt-3 text-2xl font-semibold tracking-tight">Sequence Chip Atlas</h2>
          <p className="mt-1 max-w-xl text-sm text-muted-foreground">
            Use the Katagami registry theme, then compose these shadcn primitives
            with the language-specific component recipes.
          </p>
        </div>
        <Button>Apply theme</Button>
      </div>

      <Tabs defaultValue="components">
        <TabsList>
          <TabsTrigger value="components">Components</TabsTrigger>
          <TabsTrigger value="states">States</TabsTrigger>
          <TabsTrigger value="export">Export</TabsTrigger>
        </TabsList>
      </Tabs>

      <Card>
        <CardHeader>
          <CardTitle>Component recipe</CardTitle>
          <CardDescription>
            Replace this starter content with the agent-authored product scene
            from components.md and preview-shots.json.
          </CardDescription>
        </CardHeader>
        <CardContent className="grid gap-3 sm:grid-cols-[1fr_auto]">
          <Input defaultValue="Tokenized shadcn surface" aria-label="Recipe name" />
          <Button variant="secondary">Preview state</Button>
        </CardContent>
        <CardFooter className="justify-between">
          <Badge>Ready</Badge>
          <Button variant="outline">Copy recipe</Button>
        </CardFooter>
      </Card>
    </section>
  );
}

{
  "$schema": "https://ui.shadcn.com/schema/registry-item.json",
  "cssVars": {
    "dark": {
      "accent": "#10A66E",
      "accent-foreground": "#ffffff",
      "background": "#0f1115",
      "border": "#303642",
      "card": "#181b22",
      "card-foreground": "#f8fafc",
      "chart-1": "#2445D8",
      "chart-2": "#0F8DB3",
      "chart-3": "#10A66E",
      "chart-4": "#10A66E",
      "chart-5": "#B7791F",
      "destructive": "#C84A5A",
      "foreground": "#f8fafc",
      "input": "#303642",
      "muted": "#252a33",
      "muted-foreground": "#a1a1aa",
      "popover": "#181b22",
      "popover-foreground": "#f8fafc",
      "primary": "#2445D8",
      "primary-foreground": "#ffffff",
      "radius": "18px",
      "ring": "#10A66E",
      "secondary": "#252a33",
      "secondary-foreground": "#f8fafc",
      "sidebar": "#181b22",
      "sidebar-accent": "#10A66E",
      "sidebar-accent-foreground": "#ffffff",
      "sidebar-border": "#303642",
      "sidebar-foreground": "#f8fafc",
      "sidebar-primary": "#2445D8",
      "sidebar-primary-foreground": "#ffffff",
      "sidebar-ring": "#10A66E"
    },
    "light": {
      "accent": "#10A66E",
      "accent-foreground": "#ffffff",
      "background": "#F8FAF8",
      "border": "#D7E1EA",
      "card": "#FFFFFF",
      "card-foreground": "#122033",
      "chart-1": "#2445D8",
      "chart-2": "#0F8DB3",
      "chart-3": "#10A66E",
      "chart-4": "#10A66E",
      "chart-5": "#B7791F",
      "destructive": "#C84A5A",
      "foreground": "#122033",
      "input": "#D7E1EA",
      "muted": "#607082",
      "muted-foreground": "#122033",
      "popover": "#FFFFFF",
      "popover-foreground": "#122033",
      "primary": "#2445D8",
      "primary-foreground": "#ffffff",
      "radius": "18px",
      "ring": "#10A66E",
      "secondary": "#0F8DB3",
      "secondary-foreground": "#ffffff",
      "sidebar": "#FFFFFF",
      "sidebar-accent": "#2F80ED",
      "sidebar-accent-foreground": "#ffffff",
      "sidebar-border": "#D7E1EA",
      "sidebar-foreground": "#122033",
      "sidebar-primary": "#2445D8",
      "sidebar-primary-foreground": "#ffffff",
      "sidebar-ring": "#10A66E"
    },
    "theme": {}
  },
  "meta": {
    "componentManifest": [
      "button",
      "card",
      "input",
      "textarea",
      "select",
      "dialog",
      "sheet",
      "tabs",
      "badge",
      "separator",
      "checkbox",
      "switch",
      "slider",
      "tooltip",
      "dropdown-menu",
      "table"
    ],
    "installCommand": "npx shadcn@latest add button card input textarea select dialog sheet tabs badge separator checkbox switch slider tooltip dropdown-menu table",
    "languageId": "en-019e4c10-31db-71d3-8e7b-c11e926ca9bf",
    "nativeTokenNames": {
      "borders": [
        "accent_width",
        "character",
        "default_width",
        "style"
      ],
      "colors": [
        "accent",
        "background",
        "border",
        "error",
        "info",
        "muted",
        "primary",
        "secondary",
        "success",
        "surface",
        "text",
        "warning"
      ],
      "motion": [
        "duration",
        "easing",
        "philosophy"
      ],
      "radii": [
        "full",
        "lg",
        "md",
        "none",
        "sm"
      ],
      "shadows": [
        "lg",
        "md",
        "sm"
      ],
      "spacing": [
        "base",
        "scale"
      ],
      "surfaces": [
        "bg_pattern",
        "card_style",
        "treatment"
      ],
      "typography": [
        "base_size",
        "body_font",
        "google_fonts_url",
        "heading_font",
        "letter_spacing",
        "line_height",
        "mono_font",
        "scale_ratio"
      ]
    },
    "slug": "sequence-chip-atlas",
    "source": "katagami"
  },
  "name": "sequence-chip-atlas",
  "title": "Sequence Chip Atlas shadcn Theme",
  "type": "registry:theme"
}

# Sequence Chip Atlas shadcn/ui Components

Artifact: `component-recipes-v1`
Author: `katagami-ui-projection`
Language ID: `en-019e4c10-31db-71d3-8e7b-c11e926ca9bf`
Slug: `sequence-chip-atlas`

## Intent

A clean product-interface language where genomic sequence logic becomes operational UI grammar: compact rectangular chips encode category, confidence, progress, and relationships on calm white surfaces without literal helix decoration.

## Required primitives

- button
- card
- input
- textarea
- select
- dialog
- sheet
- tabs
- badge
- separator
- checkbox
- switch
- slider
- tooltip
- dropdown-menu
- table

Install with `npx shadcn@latest add button card input textarea select dialog sheet tabs badge separator checkbox switch slider tooltip dropdown-menu table`.

## Token cues

Colors:

{
  "accent": "#10A66E",
  "background": "#F8FAF8",
  "border": "#D7E1EA",
  "error": "#C84A5A",
  "info": "#2F80ED",
  "muted": "#607082",
  "primary": "#2445D8",
  "secondary": "#0F8DB3",
  "success": "#10A66E",
  "surface": "#FFFFFF",
  "text": "#122033",
  "warning": "#B7791F"
}

Typography:

{
  "base_size": "16px",
  "body_font": "Hanken Grotesk",
  "google_fonts_url": "https://fonts.googleapis.com/css2?family=Familjen+Grotesk:wght@500;600;700&family=Hanken+Grotesk:wght@400;500;600;700&family=Reddit+Mono:wght@400;500;600&display=swap",
  "heading_font": "Familjen Grotesk",
  "letter_spacing": "-0.02em",
  "line_height": 1.52,
  "mono_font": "Reddit Mono",
  "scale_ratio": 1.25
}

## Visual character to preserve

- Use pill-rounded white panels with 1px cool-blue borders and a committed 18px/10px radius system so geometry stays product-clean rather than plush.
- Build the gene motif from short horizontal sequence chips, 6x10 micro-rectangles, and quantized strand rows embedded inside components instead of background patterning.
- Reserve four cool sequence accents for named semantics only: indigo identity, blue confidence, turquoise linkage, and green completion across chips, badges, and progress segments.
- Compose screens on an asymmetric shell with one dominant sequence reader, narrow annotation column, and deliberate grid break via a floating relationship map card.
- Show focus and hover states by extending, joining, or inverting sequence chips rather than using generic glow, opacity fades, or decorative stripes.

## ShadSync visual profile

{
  "family": "system",
  "material": "flat",
  "contour": "pebble",
  "border": "solid",
  "underlay": true,
  "grain": false,
  "stickerBadges": true,
  "motion": "still",
  "density": "balanced",
  "accents": [
    "primary",
    "accent",
    "secondary",
    "muted"
  ]
}

## Signature component recipes

### Button
Use `Button` for primary, secondary, outline, and ghost actions. Primary actions must expose the language's strongest contrast pair, while secondary and ghost actions should preserve the surface treatment instead of falling back to default neutral SaaS styling.

### Card
Use `Card`, `CardHeader`, `CardContent`, `CardFooter`, and `CardAction` as the main composition frame. Cards should demonstrate the language's surface, border, hierarchy, and density rules rather than appearing as generic rounded rectangles.

### Input and Textarea
Use `Input` and `Textarea` with visible focus rings, field labels, validation states, and the language's rhythm. Forms should show real product content, not placeholder-only controls.

### Select, Tabs, and Table
Use `Select`, `Tabs`, and `Table` to prove navigation, filtering, and dense data states. The table should show row rhythm, separators, hover/focus states, and an empty or status state when the language calls for it.

### Dialog and Sheet
Use `Dialog` for centered decisions and `Sheet` for contextual editing. Both should inherit the language's spacing, border, overlay, and motion rules.

## Preview shots

- `application-shell`: dashboard or workspace shell with navigation, cards, forms, and state badges.
- `detail-editor`: focused editing flow using input, textarea, select, switch/checkbox, dialog or sheet, and action buttons.
- `data-operations`: table-heavy operational view with tabs, dropdown menu affordances, badges, and destructive/empty states.
- Each preview shot must include a renderable `scene` payload with concrete headline, description, actions, and rows/fields/stats for the UI preview.

## Implementation contract

- Start from local `ui/src/components/ui` shadcn-style primitives; do not create a second component system.
- Apply `/katagami/shadcn/sequence-chip-atlas/registry-theme.json` variables, then use these recipes for composition and state design.
- Preserve Katagami token names as source metadata; shadcn semantic names are only the export surface.
- Do: Use sequence colors only for named data states such as confidence, lineage, linked, and complete.; Keep surfaces mostly white with thin cool borders, clear labels, and explicit focus states.; Represent genomic ideas through data chips, strand fragments, sequence IDs, and alignment behavior.; Create product scenes around variant review, cohort matching, or model confidence instead of generic analytics.
- Do not: Do not use DNA helix wallpaper, molecule ornaments, lab glass visuals, or science textbook diagrams.; Do not use square-grid backgrounds, dotted texture fields, colored left rails, card stripes, or chipped diagonal corners.; Do not let status colors carry identity without the chip grammar and layout structure.; Do not use rainbow palettes, neon cyberpunk glow, retro game pixels, or generic dashboard card rows.

## Copy-paste component example

This generated starter proves the import shape. Production Katagami agents should replace it with a language-specific product composition.

```tsx
import { Badge } from "@/components/ui/badge";
import { Button } from "@/components/ui/button";
import {
  Card,
  CardContent,
  CardDescription,
  CardFooter,
  CardHeader,
  CardTitle,
} from "@/components/ui/card";
import { Input } from "@/components/ui/input";
import { Tabs, TabsList, TabsTrigger } from "@/components/ui/tabs";

export function SequenceChipAtlasShadcnKit() {
  return (
    <section className="grid gap-4 rounded-[var(--radius)] border bg-background p-4 text-foreground">
      <div className="flex items-start justify-between gap-4">
        <div>
          <Badge variant="outline">shadcn/ui</Badge>
          <h2 className="mt-3 text-2xl font-semibold tracking-tight">Sequence Chip Atlas</h2>
          <p className="mt-1 max-w-xl text-sm text-muted-foreground">
            Use the Katagami registry theme, then compose these shadcn primitives
            with the language-specific component recipes.
          </p>
        </div>
        <Button>Apply theme</Button>
      </div>

      <Tabs defaultValue="components">
        <TabsList>
          <TabsTrigger value="components">Components</TabsTrigger>
          <TabsTrigger value="states">States</TabsTrigger>
          <TabsTrigger value="export">Export</TabsTrigger>
        </TabsList>
      </Tabs>

      <Card>
        <CardHeader>
          <CardTitle>Component recipe</CardTitle>
          <CardDescription>
            Replace this starter content with the agent-authored product scene
            from components.md and preview-shots.json.
          </CardDescription>
        </CardHeader>
        <CardContent className="grid gap-3 sm:grid-cols-[1fr_auto]">
          <Input defaultValue="Tokenized shadcn surface" aria-label="Recipe name" />
          <Button variant="secondary">Preview state</Button>
        </CardContent>
        <CardFooter className="justify-between">
          <Badge>Ready</Badge>
          <Button variant="outline">Copy recipe</Button>
        </CardFooter>
      </Card>
    </section>
  );
}
```

## Layout notes

{
  "breakpoints": "desktop 1200px, tablet 768px, mobile 375px",
  "grid": "12-column desktop shell with a 7-column dominant reader, 3-column annotation stack, and 2-column navigation/context rail; tablet folds to two columns and mobile to one column.",
  "whitespace": "Use 64px page gutters, 32px panel gaps, 16px field groups, and 8px chip gaps so proximity and dramatic spacing range carry hierarchy."
}

{
  "artifact": "katagami:shadcn-preview-shots",
  "version": "preview-shots-v1",
  "generator": "katagami-ui-compatibility-projection",
  "generatedBy": "katagami-ui-projection",
  "requiresVisualProfile": true,
  "schema": "katagami:shadcn-preview-shots/renderable-v1",
  "renderable": true,
  "language": {
    "id": "en-019e4c10-31db-71d3-8e7b-c11e926ca9bf",
    "name": "Sequence Chip Atlas",
    "slug": "sequence-chip-atlas"
  },
  "installCommand": "npx shadcn@latest add button card input textarea select dialog sheet tabs badge separator checkbox switch slider tooltip dropdown-menu table",
  "primitives": [
    "button",
    "card",
    "input",
    "textarea",
    "select",
    "dialog",
    "sheet",
    "tabs",
    "badge",
    "separator",
    "checkbox",
    "switch",
    "slider",
    "tooltip",
    "dropdown-menu",
    "table"
  ],
  "identityNotes": [
    "Use pill-rounded white panels with 1px cool-blue borders and a committed 18px/10px radius system so geometry stays product-clean rather than plush.",
    "Build the gene motif from short horizontal sequence chips, 6x10 micro-rectangles, and quantized strand rows embedded inside components instead of background patterning.",
    "Reserve four cool sequence accents for named semantics only: indigo identity, blue confidence, turquoise linkage, and green completion across chips, badges, and progress segments.",
    "Compose screens on an asymmetric shell with one dominant sequence reader, narrow annotation column, and deliberate grid break via a floating relationship map card.",
    "Show focus and hover states by extending, joining, or inverting sequence chips rather than using generic glow, opacity fades, or decorative stripes."
  ],
  "visualProfile": {
    "family": "system",
    "material": "flat",
    "contour": "pebble",
    "border": "solid",
    "underlay": true,
    "grain": false,
    "stickerBadges": true,
    "motion": "still",
    "density": "balanced",
    "accents": [
      "primary",
      "accent",
      "secondary",
      "muted"
    ]
  },
  "shots": [
    {
      "id": "application-shell",
      "title": "Application shell",
      "viewport": "desktop",
      "primitives": [
        "button",
        "card",
        "input",
        "select",
        "tabs",
        "badge",
        "separator",
        "table"
      ],
      "composition": "A real product workspace with navigation, summary cards, filtering controls, and one dense content region.",
      "mustShow": [
        "primary and secondary actions",
        "card hierarchy",
        "filterable state",
        "table or list density"
      ],
      "avoid": [
        "component inventory walls",
        "placeholder-only content",
        "generic rounded SaaS chrome"
      ],
      "scene": {
        "eyebrow": "workspace spread",
        "headline": "Sequence Chip Atlas launch room",
        "description": "A product team workspace where navigation, filters, metrics, and dense rows carry the language's visible structure.",
        "primaryAction": "Apply theme",
        "secondaryAction": "Review states",
        "stats": [
          {
            "label": "components",
            "value": "16",
            "tone": "accent"
          },
          {
            "label": "states",
            "value": "ready"
          },
          {
            "label": "density",
            "value": "balanced",
            "tone": "warning"
          }
        ],
        "rows": [
          {
            "label": "Primary flow",
            "value": "mapped",
            "status": "active"
          },
          {
            "label": "Token coverage",
            "value": "semantic",
            "status": "synced"
          },
          {
            "label": "Responsive proof",
            "value": "queued",
            "status": "review"
          }
        ],
        "statuses": [
          "Active",
          "Synced",
          "Draft"
        ]
      }
    },
    {
      "id": "detail-editor",
      "title": "Detail editor",
      "viewport": "tablet",
      "primitives": [
        "button",
        "card",
        "input",
        "textarea",
        "select",
        "checkbox",
        "switch",
        "slider",
        "dialog",
        "sheet"
      ],
      "composition": "A focused editing flow with form fields, validation, confirmation, and a contextual side panel.",
      "mustShow": [
        "focus ring",
        "error or destructive state",
        "dialog or sheet treatment",
        "written guidance content"
      ],
      "avoid": [
        "unstyled browser controls",
        "floating cards inside cards",
        "missing labels"
      ],
      "scene": {
        "eyebrow": "editing flow",
        "headline": "Language recipe editor",
        "description": "A focused form proving labels, validation, toggles, panel rhythm, and action hierarchy.",
        "primaryAction": "Save recipe",
        "secondaryAction": "Open sheet",
        "fields": [
          {
            "label": "Component family",
            "value": "Narrative cards"
          },
          {
            "label": "State treatment",
            "value": "Visible focus + validation"
          },
          {
            "label": "Motion",
            "value": "Small lift, no opacity-only fade"
          }
        ],
        "statuses": [
          "Focus",
          "Invalid",
          "Confirmed"
        ]
      }
    },
    {
      "id": "data-operations",
      "title": "Data operations",
      "viewport": "mobile",
      "primitives": [
        "button",
        "tabs",
        "badge",
        "dropdown-menu",
        "table",
        "tooltip",
        "separator"
      ],
      "composition": "A compact operational view proving row rhythm, stacked actions, menu states, badges, and empty/destructive states.",
      "mustShow": [
        "responsive reflow",
        "dense row styling",
        "menu affordance",
        "status badge system"
      ],
      "avoid": [
        "desktop-only tables",
        "text overflow",
        "default shadcn spacing without Katagami character"
      ],
      "scene": {
        "eyebrow": "operations",
        "headline": "Compact review queue",
        "description": "A narrow viewport scene with rows, menus, tooltips, badges, and destructive affordances.",
        "primaryAction": "Resolve",
        "secondaryAction": "Filter",
        "rows": [
          {
            "label": "Button hierarchy",
            "value": "approved",
            "status": "ok"
          },
          {
            "label": "Table rhythm",
            "value": "needs pass",
            "status": "watch"
          },
          {
            "label": "Empty state",
            "value": "designed",
            "status": "done"
          }
        ],
        "statuses": [
          "Queued",
          "Blocked",
          "Done"
        ]
      }
    }
  ],
  "componentRecipes": [
    {
      "primitive": "button",
      "intent": "Prove action hierarchy, focus, disabled, and destructive states."
    },
    {
      "primitive": "card",
      "intent": "Carry the language surface, border, elevation, and density rules."
    },
    {
      "primitive": "input",
      "intent": "Show labels, focus rings, validation, and spacing rhythm."
    },
    {
      "primitive": "textarea",
      "intent": "Show longer guidance, validation copy, and writing density."
    },
    {
      "primitive": "select",
      "intent": "Show filtering, selection contrast, and menu trigger styling."
    },
    {
      "primitive": "dialog",
      "intent": "Show centered decision states and overlay treatment."
    },
    {
      "primitive": "sheet",
      "intent": "Show contextual side panels and responsive editing."
    },
    {
      "primitive": "tabs",
      "intent": "Show navigational structure and active/inactive contrast."
    },
    {
      "primitive": "badge",
      "intent": "Show compact status vocabulary and semantic colors."
    },
    {
      "primitive": "separator",
      "intent": "Show section rhythm without generic gray dividers."
    },
    {
      "primitive": "checkbox",
      "intent": "Show binary selection with visible focus and checked states."
    },
    {
      "primitive": "switch",
      "intent": "Show settings toggles and on/off contrast."
    },
    {
      "primitive": "slider",
      "intent": "Show numeric adjustment with track/thumb styling."
    },
    {
      "primitive": "tooltip",
      "intent": "Show concise explanation styling above compact controls."
    },
    {
      "primitive": "dropdown-menu",
      "intent": "Show action menus, destructive items, and grouped choices."
    },
    {
      "primitive": "table",
      "intent": "Show dense operational data, separators, row states, and responsive behavior."
    }
  ],
  "qualityRules": {
    "do": [
      "Use sequence colors only for named data states such as confidence, lineage, linked, and complete.",
      "Keep surfaces mostly white with thin cool borders, clear labels, and explicit focus states.",
      "Represent genomic ideas through data chips, strand fragments, sequence IDs, and alignment behavior.",
      "Create product scenes around variant review, cohort matching, or model confidence instead of generic analytics."
    ],
    "dont": [
      "Do not use DNA helix wallpaper, molecule ornaments, lab glass visuals, or science textbook diagrams.",
      "Do not use square-grid backgrounds, dotted texture fields, colored left rails, card stripes, or chipped diagonal corners.",
      "Do not let status colors carry identity without the chip grammar and layout structure.",
      "Do not use rainbow palettes, neon cyberpunk glow, retro game pixels, or generic dashboard card rows."
    ]
  }
}